SNP Profiles matching PA 195 [PER]

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_Input profile	CC	GG	CG	CC	TT	CC	CC	TT	CC	AA	AG	CC	AG	CC
1._RUQ_1642	CC	GG	CG	CC	TT	CC	CC	TT	CC	AA	AG	CC	AG	CC
2._RUQ_1642	CC	GG	CG	CC	TT	CC	CC	TT	CC	AA	AG	CC	AG	CC
3._MARPER_27	CC	GG	CG	CC	-	CC	CC	-	CC	AA	AG	-	AG	CC
4._RUQ_1576	_	GG	CG	CC	_	_	_	TT	_	_	_	CC	AG	_
5._RUQ_1642	_	GG	CG	CC	_	_	_	TT	_	_	_	CC	AG	_
6._RUQ_1642	_	GG	CG	CC	_	_	_	TT	_	_	_	CC	AG	_
7._PA_195_[PER]	CC	GG	CG	CC	TT	CC	CC	TT	CC	AA	AG	CC	AG	CC
8._PA_195_[PER]	CC	GG	CG	CC	TT	CC	CC	TT	CC	AA	AG	CC	AG	CC
9._PA_195_[PER]	CC	GG	CG	CC	TT	CC	CC	TT	CC	AA	AG	CC	AG	CC
10._PA_195_[PER]	CC	GG	CG	CC	TT	CC	CC	TT	CC	AA	AG	CC	AG	CC
11._GC-05-166-4-19	CC	GG	CG	CC	TT	CC	CC	TT	CC	AA	AG	CC	AG	CC
12._GC-05-166-4-19	CC	GG	CG	CC	TT	CC	CC	TT	CC	AA	AG	CC	AG	CC
13._GC-05-166-4-19	CC	GG	CG	CC	TT	CC	CC	TT	CC	AA	AG	CC	AG	CC
14._GC-05-166-4-19	CC	GG	CG	CC	TT	CC	CC	TT	CC	AA	AG	CC	AG	CC
15._PA_128_[PER]	CC	GG	GG	CT	TT	CC	CT	TT	CC	AA	AG	CC	AG	CC
16._PA_115_[PER]	CC	GG	CG	CC	TT	AC	CT	TT	CC	AA	AG	CC	GG	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CG	CC	CC	GG	GG	AA	TT	CC	CG	GG	CC	AA	AA
1._RUQ_1642	AA	CG	CC	CC	GG	GG	AA	TT	CC	CG	GG	CC	AA	AA
2._RUQ_1642	AA	CG	CC	CC	GG	GG	AA	TT	CC	CG	GG	CC	AA	AA
3._MARPER_27	AA	CG	-	CC	-	GG	AA	TT	-	CG	-	CC	AA	AA
4._RUQ_1576	_	_	_	CC	GG	GG	_	TT	CC	CG	GG	CC	AA	AA
5._RUQ_1642	_	_	_	CC	GG	GG	_	TT	CC	CG	GG	CC	AA	AA
6._RUQ_1642	_	_	_	CC	GG	GG	_	TT	CC	CG	GG	CC	AA	AA
7._PA_195_[PER]	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA	AA
8._PA_195_[PER]	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA	AA
9._PA_195_[PER]	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA	AA
10._PA_195_[PER]	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA	AA
11._GC-05-166-4-19	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA	AA
12._GC-05-166-4-19	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA	AA
13._GC-05-166-4-19	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA	AA
14._GC-05-166-4-19	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA	AA
15._PA_128_[PER]	AA	CG	CC	CC	GG	-	AA	TT	CC	CG	GT	CC	AA	AA
16._PA_115_[PER]	AA	CG	CC	CC	GG	-	AA	TT	CC	GG	GG	CC	AA	AA

	29	30	31	32	33	34	35	36	37	38
_Input profile	GG	AA	CC	GG	CC	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
1._RUQ_1642	GG	AA	CC	GG	CC	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
2._RUQ_1642	GG	AA	CC	GG	CC	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
3._MARPER_27	GG	-	CC	GG	-	-	GG	-	AT	-	X_X	X_X	X_X	X_X
4._RUQ_1576	_	AA	CC	GG	CC	CC	GG	AC	_	_	X_X	X_X	X_X	X_X
5._RUQ_1642	_	AA	CC	GG	CC	CC	GG	AC	_	_	X_X	X_X	X_X	X_X
6._RUQ_1642	_	AA	CC	GG	CC	CC	GG	AC	_	_	X_X	X_X	X_X	X_X
7._PA_195_[PER]	GG	AA	CC	GG	CC	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
8._PA_195_[PER]	GG	AA	CC	GG	CC	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
9._PA_195_[PER]	GG	AA	CC	GG	CC	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
10._PA_195_[PER]	GG	AA	CC	GG	CC	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
11._GC-05-166-4-19	GG	AA	CC	GG	CC	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
12._GC-05-166-4-19	GG	AA	CC	GG	CC	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
13._GC-05-166-4-19	GG	AA	CC	GG	CC	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
14._GC-05-166-4-19	GG	AA	CC	GG	CC	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
15._PA_128_[PER]	GG	AA	CC	AG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
16._PA_115_[PER]	GG	AA	CC	GG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X

Input profile: PA_195_[PER]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B C165 T1

Dapeng Zhang, 2016

1._PA_195_[PER] RUQ_1642

identical
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._PA_195_[PER] RUQ_1642

identical
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._MARPER_27

identical
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 491A

Dapeng Zhang, 2014

4._PA_124_[PER] RUQ_1576

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._PA_195_[PER] RUQ_1642

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._PA_195_[PER] RUQ_1642

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

7._PA_195_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._PA_195_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 1 > FP

Dapeng Zhang, 2016

9._PA_195_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 2 > FP

Dapeng Zhang, 2016

10._PA_195_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 5 > FP

Dapeng Zhang, 2016

11._PA_195_[PER] GC-05-166-4-19

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._PA_195_[PER] GC-05-166-4-19

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

13._PA_195_[PER] GC-05-166-4-19

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._PA_195_[PER] GC-05-166-4-19

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

15._PA_128_[PER]

91.9 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D272 T2

Dapeng Zhang, 2014

16._PA_115_[PER]

90.5 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 324

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25